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(consistent with moderate TN levels), But again, total chlorophyll a levels in 2016 are still <br /> slightly higher than the long term average at most stations, including in the eastern basins and <br /> did approach the 10 ug/L threshold cut point that indicates decreasing habitat health. The <br /> levels of nitrogen and total chlorophyll a pigment in the eastern.basins is also consistent with <br /> these basins only losing eelgrass recently and having only moderate nitrogen.enrichment: <br /> However, most waters of both estuarine systems have total chlorophyll a averages greater than <br /> 5 ug I; These levels of phytoplankton biomass result in enhanced deposition of organic <br /> matter to the bottom sediments which results in higher arnounts of oxygen uptake,negative <br /> impacts of organic matter loading on the bottom dwelling organisms and at highest levels, <br /> bottom habitats comprised of sulfidic-organic rich soft sediments after many years of nitrogen <br /> enrichment. Also, the higher amounts of phytoplankton in the water column increases the <br /> amount of oxygen being consumed during periods of low light or darkness adding to oxygen <br /> depletion and loss of fish, shellfish and bottom dwelling animals and the other organisms that <br /> feed upon them. Equally significant, the higher amounts of phytoplankton increase turbidity <br /> in the water column and reduce the amount of light that can penetrate to support eelgrass <br /> plants that are rooted to the bay bottom. This shading effect is one of the primary proximate <br /> causes of eelgrass loss world-wide, and in Popponesset Bay and Waquoit Bay in specific. <br /> Eelgrass has not been observed for over a decade in Popponesset Bay and has been reduced in <br /> Waquoit Bay to a few remaining patches in Hamblin Pond and Jehu Pond(Short and Burdick, <br /> 1996). Concomitantly, observed macroalgal growth and accumulations stimulated by high <br /> nitrogen inputs have been significant across Waquoit Bay and large areas within the <br /> Popponesset Bay Estuary. Macroalgal accumulations are a key metric indicating nitrogen <br /> enrichment and impaired habitat quality due to the associated negative effects of smothering <br /> the benthic habitat and overwhelming eelgrass habitat. Eelgrass has not been observed in the <br /> Quashnet River sub-embayment for many decades; instead high levels of macroalgae have <br /> been documented(Curley et al., 1971, Valicla et al., 1992). <br /> Oxygen depletion of bottom waters was variable but still evident within both systems in 2010- <br /> 2016 and were generally consistent with historical data, however, DO was generally lower in <br /> 2016 across the Waquoit Bay and Popponesset Bay stations with the exception of Shoestring <br /> Bay and Okway Bay which showed less summer DO depletion in 2016 compared to the 2013- <br /> 2015. Interestingly, the generally lower DO in the Waquoit and Popponesset Bay systems <br /> follows the distribution of higher total chlorophyll-a and TN levels (Figures 9, 13)with the <br /> exception of stations in Okway Bay and Shoestring Bay. The linkage of oxygen depletion to <br /> nitrogen enrichment is seen in each year's results with higher oxygen levels at lower levels of <br /> nitrogen enrichment and greater depletion in basins with higher nitrogen enrichment. In 2016 <br /> oxygen depletion tended to be greater than in previous years with the exception of the more <br /> well flushed tidal basins of the Popponesset Estuary,particularly Okway Bay and Shoestring <br /> Bay. More specifically, 8 of the 13 stations sampled in Popponesset Bay in 2016 recorded lower <br /> D.O. than the 2013-2015 average and only 1 station showed higher DO levels. Similarly,DO <br /> conditions in Waquoit Bay were generally worse in 2016 compared to the average levels for <br /> 2013-2015. In 2016, 10 stations showed lower DO concentrations compared to the 2013-2015 <br /> average and only 3 stations were higher. The depressed DO levels likely result from the <br /> large, prolonged phytoplankton bloom in 2016,which results in higher organic loading to the <br /> sediments and elevated water column night-time respiration. However, it is likely that the basins <br /> of these estuaries remain generally nutrient and organic matter enriched to the point where <br /> oxygen depletion will begin to occur when vertical mixing of the water column decreases or a <br /> period of low light occurs(Sawabini �t al. 2014). Both factors are inter-related and both likely <br /> 18 <br />